Back قاعدة بيانات توجهات البروتينات في الأغشية Arabic Orientations of Proteins in Membranes database English OPM (base de données) French Orientations of Proteins in Membranes Galician Orientations of Proteins in Membranes database Japanese Baza podataka orijentacija proteina u membranama Serbo-Croatian

Baza podataka orijentacija proteina u membranama

Periferni protein iz OPM baze podataka (P40phox PX domen NADPH oksidaze). Srednja ravan lipidnog dvosloja - srne tačke. Granica ugljenovodoničnog centralnog regiona - plave tačke (intracelularna strana). Slog lipidnih fosfata - žute tačke.

Baza podataka orijentacija proteina u membranama (engl. Orientations of Proteins in Membranes, OPM) sadrži prostorne orijentacije proteinskih tri-dimenzionalnih struktura u odnosu na lipidni dvosloj.[1][2][3] Ova baza podatak je bila korišćena u eksperimentalnim i teoretskim studijama za membranu-vezanih proteina.[4][5][6][7][8]

  1. ^ Lomize, Mikhail A.; Lomize, Andrei L; Pogozheva, Irina D.; Mosberg, Henry I. (2006). „OPM: Orientations of Proteins in Membranes database” (PDF). Bioinformatics. 22 (5): 623—625. PMID 16397007. doi:10.1093/bioinformatics/btk023. 
  2. ^ Lomize, Andrei L; Pogozheva, Irina D.; Lomize, Mikhail A.; Mosberg, Henry I. (2006). „Positioning of proteins in membranes: A computational approach” (PDF). Protein Science. 15 (6): 1318—1333. PMC 2242528 Слободан приступ. PMID 16731967. doi:10.1110/ps.062126106. 
  3. ^ Lomize, Andrei L; Pogozheva, Irina D.; Lomize, Mikhail A.; Mosberg, Henry I. (2007). „The role of hydrophobic interactions in positioning of peripheral proteins in membranes” (PDF). BMC Structural Biology. 7 (44): 44. PMC 1934363 Слободан приступ. PMID 17603894. doi:10.1186/1472-6807-7-44. 
  4. ^ Park, Yungki; Helms, Volkhard (2007). „On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins”. Bioinformatics. 23 (6): 701—708. PMID 17237049. doi:10.1093/bioinformatics/btl653. 
  5. ^ Marsh, Derek; Jost, Micha; Peggion, Cristina; Toniolo, Claudio (2007). „TOAC spin labels in the backbone of alamethicin: EPR studies in lipid membranes”. Biophysical Journal. 92 (2): 473—481. PMC 1751395 Слободан приступ. PMID 17056731. doi:10.1529/biophysj.106.092775. 
  6. ^ Punta, Marco; Forrest, Lucy R.; Bigelow, Henry; Kernytsky, Andrew; Liu, Jinfeng; Rost, Burkhard (2007). „Membrane protein prediction methods”. Methods. 41 (4): 460—474. PMC 1934899 Слободан приступ. PMID 17367718. doi:10.1016/j.ymeth.2006.07.026. 
  7. ^ Cherezov, V; Yamashita, E; Liu, W; Zhalnina, M; Cramer, WA; Caffrey, M (2006). „In Meso Structure of the Cobalamin Transporter, BtuB, at 1.95 Ångstrom Resolution”. J. Mol. Biol. 364 (4): 716—734. PMC 1808586 Слободан приступ. PMID 17028020. doi:10.1016/j.jmb.2006.09.022. 
  8. ^ Páli, Tibor; Bashtovyy, Denys; Marsh, Derek (2006). „Stoichiometry of lipid interactions with transmembrane proteins - Deduced from the 3D structures”. Protein Sci. 15 (5): 1153—1161. PMC 2242517 Слободан приступ. PMID 16641489. doi:10.1110/ps.052021406. 
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